Data from Silverman et al. (2018) Microbiome

High Resolution (hourly and daily) sampling of 4 in vitro artificial gut models with many technical replicates to identify technical variation.

Usage

data(mallard_family)

Format

A list containing "otu_table", "sample_data", "tax_table", and "refseq".

Details

This data is at the family level and processed as in Silverman et al. 2018. Data at the sequence variant level without preprocessing is given in mallard

References

Silverman et al. "Dynamic linear models guide design and analysis of microbiota studies within artificial human guts". Microbiome 2018 6:202