Data from Silverman et al. (2018) Microbiome

High Resolution (hourly and daily) sampling of 4 in vitro artificial gut models with many technical replicates to identify technical variation.

Usage

data(mallard)

A list containing "otu_table", "sample_data", "tax_table", and "refseq".

This data is at the sequence variant level. Data at the family level processed as in Silverman et al. 2018 is given in mallard_family

Silverman et al. "Dynamic linear models guide design and analysis of microbiota studies within artificial human guts". Microbiome 2018 6:202