R/fido_transforms.R
fido_transforms.Rd
These are a collection of convenience functions for transforming fido fit objects to a number of different representations including ILR bases, CLR coordinates, ALR coordinates, and proportions.
to_proportions(m)
to_alr(m, d)
to_ilr(m, V = NULL)
to_clr(m)
# S3 method for pibblefit
to_proportions(m)
# S3 method for orthusfit
to_proportions(m)
# S3 method for pibblefit
to_alr(m, d)
# S3 method for orthusfit
to_alr(m, d)
# S3 method for pibblefit
to_ilr(m, V = NULL)
# S3 method for orthusfit
to_ilr(m, V = NULL)
# S3 method for pibblefit
to_clr(m)
# S3 method for orthusfit
to_clr(m)
object
For orthus, transforms only appleid to log-ratio parameters
Note: that there is a degeneracy of representations for a covariance
matrix represented in terms of proportions. As such the function
to_proportions
does not attempt to transform parameters Sigma
or prior Xi and instead just removes them from the pibblefit object returned.